libStatGen Software 1
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Modify.h
1/*
2 * Copyright (C) 2010 Regents of the University of Michigan
3 *
4 * This program is free software: you can redistribute it and/or modify
5 * it under the terms of the GNU General Public License as published by
6 * the Free Software Foundation, either version 3 of the License, or
7 * (at your option) any later version.
8 *
9 * This program is distributed in the hope that it will be useful,
10 * but WITHOUT ANY WARRANTY; without even the implied warranty of
11 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
12 * GNU General Public License for more details.
13 *
14 * You should have received a copy of the GNU General Public License
15 * along with this program. If not, see <http://www.gnu.org/licenses/>.
16 */
17
18void testModify();
19
20class modify
21{
22public:
23 void testModify(const char* filename);
24
25private:
26 void modifyPosition();
27
28 void modifyCigar();
29
30 void modifyFlag();
31
32 // Open and read the first record.
33 void openAndRead1Rec();
34
35 void modifyTags();
36
37 // Variables.
38 std::string myFilename;
39
40 // Rather than passing around all these variables, just store them in the class.
41 SamFile samIn;
42 SamFileHeader samHeader;
43 SamRecord samRecord;
44};
This class allows a user to get/set the fields in a SAM/BAM Header.
Allows the user to easily read/write a SAM/BAM file.
Definition SamFile.h:36
Class providing an easy to use interface to get/set/operate on the fields in a SAM/BAM record.
Definition SamRecord.h:52