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| BamIndex.cpp |
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| BamIndex.h |
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| BamInterface.cpp |
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| BamInterface.h |
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| CigarHelper.cpp |
|
| CigarHelper.h |
|
| GenericSamInterface.cpp |
|
| GenericSamInterface.h |
|
| Pileup.h |
|
| PileupElement.cpp |
|
| PileupElement.h |
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| PileupElementBaseQual.cpp |
|
| PileupElementBaseQual.h |
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| PosList.cpp |
|
| PosList.h |
|
| SamCoordOutput.cpp |
|
| SamCoordOutput.h |
|
| SamFile.cpp |
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| SamFile.h |
|
| SamFileHeader.cpp |
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| SamFileHeader.h |
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| SamFilter.cpp |
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| SamFilter.h |
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| SamFlag.h |
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| SamHeaderHD.cpp |
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| SamHeaderHD.h |
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| SamHeaderPG.cpp |
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| SamHeaderPG.h |
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| SamHeaderRecord.cpp |
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| SamHeaderRecord.h |
|
| SamHeaderRG.cpp |
|
| SamHeaderRG.h |
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| SamHeaderSQ.cpp |
|
| SamHeaderSQ.h |
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| SamHeaderTag.cpp |
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| SamHeaderTag.h |
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| SamHelper.h |
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| SamInterface.cpp |
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| SamInterface.h |
|
| SamQuerySeqWithRefHelper.cpp |
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| SamQuerySeqWithRefHelper.h |
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| SamRecord.cpp |
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| SamRecord.h |
|
| SamRecordHelper.cpp |
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| SamRecordHelper.h |
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| SamRecordPool.cpp |
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| SamRecordPool.h |
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| SamReferenceInfo.cpp |
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| SamReferenceInfo.h |
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| SamStatistics.cpp |
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| SamStatistics.h |
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| SamStatus.h |
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| SamTags.cpp |
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| SamTags.h |
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| SamValidation.cpp |
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| SamValidation.h |
|