libStatGen Software 1
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TestPileupElement Class Reference
Inheritance diagram for TestPileupElement:
Collaboration diagram for TestPileupElement:

Public Member Functions

virtual void analyze ()
 Perform the analysis associated with this class.
 
- Public Member Functions inherited from PileupElementBaseQual
 PileupElementBaseQual (const PileupElementBaseQual &q)
 
virtual void addEntry (SamRecord &record)
 Add an entry to this pileup element.

 
virtual void reset (int32_t refPosition)
 Resets the entry, setting the new position associated with this element.
 
- Public Member Functions inherited from PileupElement
 PileupElement ()
 Pileup element constructor.
 
 PileupElement (const PileupElement &q)
 Constructor that resets the pileup element, does not copy, just resets.
 
virtual ~PileupElement ()
 Pileup element destructor.
 
const char * getChromosome () const
 Get the chromosome name stored in this element.
 
int32_t getRefPosition () const
 Get the reference position stored in this element.
 
char getRefBase ()
 Returns the reference base for this pileup element.
 

Additional Inherited Members

- Static Public Member Functions inherited from PileupElement
static void setReference (GenomeSequence *reference)
 Set the reference to use for all pilepElements.
 
- Static Public Attributes inherited from PileupElement
static const int32_t UNSET_POSITION = -1
 
- Static Protected Member Functions inherited from PileupElement
static GenomeSequencegetReference ()
 Get a pointer to the reference.
 

Detailed Description

Definition at line 23 of file TestPileup.h.

Member Function Documentation

◆ analyze()

void TestPileupElement::analyze ( )
virtual

Perform the analysis associated with this class.

Reimplemented from PileupElementBaseQual.

Definition at line 25 of file TestPileup.cpp.

26{
27 assert(strcmp(getChromosome(), "") == 0);
28 assert(getRefPosition() == 14000);
29}
const char * getChromosome() const
Get the chromosome name stored in this element.
int32_t getRefPosition() const
Get the reference position stored in this element.

References PileupElement::getChromosome(), and PileupElement::getRefPosition().


The documentation for this class was generated from the following files: